CDS
| Accession Number | TCMCG017C31997 |
| gbkey | CDS |
| Protein Id | OMO58283.1 |
| Location | complement(join(45166..45402,45531..45697,45851..45989,46277..46556,46907..47052,48034..48259,48910..49132,49358..49506,50093..50170,50305..50411,50994..51065,51149..51196,51653..51796,51928..52015,52123..52318,53150..53333,54085..54159,54464..54593,54740..54896,54996..55070,55163..55346)) |
| GeneID | InterPro:IPR007855 |
| Organism | Corchorus olitorius |
| locus_tag | COLO4_34763 |
Protein
| Length | 1034aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA215141, BioSample:SAMN03160584 |
| db_source | AWUE01022438.1 |
| Definition | RNA-dependent RNA polymerase, eukaryotic-type [Corchorus olitorius] |
| Locus_tag | COLO4_34763 |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11699
[VIEW IN KEGG] |
| EC |
2.7.7.48
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGTTAAAGATAATCGAAAATAAGGAGAAAATTTATTCATTTGAGAACTATCTAAAGGCTTTGATACAAAATGGAACAAACTCTCCACAGAAACGACCCTCTTCTTCTCAAGGGAATTGTAGCTCCAGCTCCTTATCTTCTCCCGGTAAAACTATTCGATTGATGGTACCTTCTTCTTCTCCAGGGGCAAATAATGGAGATTTTCAGACTCCAACTATTACTCAAGTTCAAACTTACCCATTGATGAGTTGTTCTCAAGGGGCTGAGAATGGAGTTATTCAGACCCCAGCTTTTCCTACTCCTTTGAATGTTTCAACAGTAAATGTTGCCAAAGAGGGAGATTCTAGCTCTCATTTAGTAGCTTTGGGGGAACTTCAATTCCGAAAACAGTTCCTCATTTTAAATTATATTGGCTTGGAAAAGCTGGAAAAAGCATTTGAGACTGCCGATGAAATTCGAAAGCTAAAAGATTTGGCAATGGATGATTTTGAGGATAAAGTTTGTGATGCTGCTGGGGGCTTTATCAAATTAGCTGACCGTTGTAAGTCATCTCAGTGGGAGTCTGGAATGACTCATAATTACTATTGTCATGTCTCTGGAAATGGAAGTTTTAATTTCAAGGGCCCATATCTAGACAAGGCTAGAAATCATTTACAAAAGGTTTTAGGAGATGATAACATTCTGAATGTGAAATTTGACAATATCAACGATGATAAAAGCTCAGCCTGGAATCGTCGTTATGCTGTATATAGAAAAATTGCAAAAGAGGGAATCCTAGTTGGTTTGCGTCGTTACCGCTTTTTTGTGTTCAAGGATGGAGGTAAAGAAGCAAGAAAGAAAGACCCAACTGCATCAGTCAGGTGCTTTTTTGTCAGATTTGAGTCGAATGCATCCATTGACGATGGTGAAGAGTACATTTTATCTGGGAAGACAGTTCAAGATGCCAGATGTGTGTTTATGCATATTCACACCATGTCAAATATGGCCAAATATATGGCCAGATTTTCTCTAATCTTGTCAAAGACCATGAAGCTGGAAGTTGATATGCCTCAAGTCAATGTTGAAAAGATAGAGGATATACTTTGCCTGGATGAACATGGTTGTTCTGTTTACGATAAAGATGGAAAGCCAAGGATACACTCAGATGGAACTGGTTATATATCAGAGGATTTGGCATTGAAATGCCCAGCGAATGTTTTCAAAGGAAGCATCCTGAAAGGTTACAATGTTGAGGGCAAGCTATCAGACAAAGATTCGACAGAATCTCATCATAGGGTACCGCCGCTCCTGGTGCAACTTCGCCTCTTTCACAAGGGTCGTGCTGTCAAGGGAACCTTACTTGTCAATAAAAAGCTTCCACCTGGAACAATTCAAATTCGGCCTTCCATGATTAAAGTTGAACAAGATCCAGAGTGGTCAAATATTTCCACGAGTGATTCACTGGAAGTAGTTACAACAAGCACCACCTTTCATATAGCTAGTCTTTGTCGTTGTGCTTTCCTCCGTTACCCTGTCAATCCATACTTCAGCCTAGCCTTCAATCAACCAAGAAATACTACTCTTTCAAGGAATTTGGTTTTACTCCTCAGCTATGGAGGTGTCCCTGATGACTATTTTATGGAAATATTGAAGAATACATTAGAAGAGTCACAGACTTTTTTTACGAAGAAACGTGCAGCACTTAAAGTTTCTCTCAATTATGGTGGTCTTGACGATCTTGCTGCAGCAAAAATGATTTTATCGGGGATTCCCCTTAATGAGTCATTTTTGCAGTTCAGGATGTCAGTATTGTTCAATGAGGAAAAGAAGAGCCTTCGAGTAGGAAGGCTCCCTATACCTGACTCTTTCTATTTAATGGGAACCGTCGATCCAACTGGACTCCTAAAACGTGATGAAGTCAGCATTATCTTGGATAATGGACAGATTTCCGGAAAAGTGCTTGTATACCACCAACCCGGTATACATTTTGGAGACATTCATGTACTGAATGCTACATGTGTGGAAGCCTTAAATGAATATGTAGGACATGCCAAGTATGCTATATTCTTTCCTAGTAAAGGTCCACGCTCTTTGGCTGATGAGATGGCTGGGGCTGACTTTGATGGTGATTTATTTTTCGTATCAAGAAATCCCCAGTTATTGGAGTACTACAAAGTAAGTGAACCGTGGATAGAAATGCCTTCTACGAGTGGAGTTTCCAATGTAGGACCACGTGAGGTCTTAAAGGAAAATTTGGAGGATGAGCTCTTCGAGCAATTCTTGAGCACTAGGTTTCAGCCGAGGAGATGTCAACTGGCTCAAGGATCTCATATAGGTGGAGTTCCCGAGTGTGGTAGTGTTAATATCATAGAAGCTGTTGCTTGTGCTTTTGATCTAAAGGTGCTTTTGGCTGCTTTCAGTTTTGCCCTGGGTGTTTCATCTGATTGCTGGACAGCAATAATGGATCGCTTTCTTACTCTGAAAGATGATGATACTCATGAGAAAGATCAAGTAAAGAAGAACCTGCTACGCTTGGTTGATTTATATTATGAGGCTCTGGATGCACCAAAGAATGGAAAAAAGGTTGAAGTTCCAGAGGACTTGAGGGTTGGTTTATTTCCGCACTATATGGAAAAGAAGAATTCCTTCAAATCTACTTCTATCTTGGGAAAAATATATGATTTTGTCAAATCCTATGCAGAACTGCAGTCAAATCTTATAGAAGTTCAAAAGCTCCCGTTTTTCGTTGGTGGCTTTTCCGAGGAACTTGCAGCAATATGGGGTCGACATTATGATCAGTACAGGCAAGAGATGGTGAGTGCTCTGTCTTGCAATACCAAAGAAGAGAAAGAAGAAGCTGCTAGTGCACTTTTTAACAAATACAAGAAGAAATTATATGGGGCTGCCGAGTTCGAGCAGAGCGAAAAGCCTCTTGATCAAATCTACCAGGAAGCTCGGGCCATTTACAATGTTTGTTATGATTATGCTAGGCAAGTTAATGACGTGAAGAAATGTGGATTTGCATGGAAAGTTGCAGGGGCAGCTTTGTTAGACATGTATGTCTCCAAACATAATGAAATGTTATTGCCAACTGTTCCTTCAGTCTTGAAGGAACTCTTTTCTTAA |
| Protein: MLKIIENKEKIYSFENYLKALIQNGTNSPQKRPSSSQGNCSSSSLSSPGKTIRLMVPSSSPGANNGDFQTPTITQVQTYPLMSCSQGAENGVIQTPAFPTPLNVSTVNVAKEGDSSSHLVALGELQFRKQFLILNYIGLEKLEKAFETADEIRKLKDLAMDDFEDKVCDAAGGFIKLADRCKSSQWESGMTHNYYCHVSGNGSFNFKGPYLDKARNHLQKVLGDDNILNVKFDNINDDKSSAWNRRYAVYRKIAKEGILVGLRRYRFFVFKDGGKEARKKDPTASVRCFFVRFESNASIDDGEEYILSGKTVQDARCVFMHIHTMSNMAKYMARFSLILSKTMKLEVDMPQVNVEKIEDILCLDEHGCSVYDKDGKPRIHSDGTGYISEDLALKCPANVFKGSILKGYNVEGKLSDKDSTESHHRVPPLLVQLRLFHKGRAVKGTLLVNKKLPPGTIQIRPSMIKVEQDPEWSNISTSDSLEVVTTSTTFHIASLCRCAFLRYPVNPYFSLAFNQPRNTTLSRNLVLLLSYGGVPDDYFMEILKNTLEESQTFFTKKRAALKVSLNYGGLDDLAAAKMILSGIPLNESFLQFRMSVLFNEEKKSLRVGRLPIPDSFYLMGTVDPTGLLKRDEVSIILDNGQISGKVLVYHQPGIHFGDIHVLNATCVEALNEYVGHAKYAIFFPSKGPRSLADEMAGADFDGDLFFVSRNPQLLEYYKVSEPWIEMPSTSGVSNVGPREVLKENLEDELFEQFLSTRFQPRRCQLAQGSHIGGVPECGSVNIIEAVACAFDLKVLLAAFSFALGVSSDCWTAIMDRFLTLKDDDTHEKDQVKKNLLRLVDLYYEALDAPKNGKKVEVPEDLRVGLFPHYMEKKNSFKSTSILGKIYDFVKSYAELQSNLIEVQKLPFFVGGFSEELAAIWGRHYDQYRQEMVSALSCNTKEEKEEAASALFNKYKKKLYGAAEFEQSEKPLDQIYQEARAIYNVCYDYARQVNDVKKCGFAWKVAGAALLDMYVSKHNEMLLPTVPSVLKELFS |